Rayleigh User Manual

Contents:

• Overview
  • Referencing
  • Acknowledging
• Compiling and Installing Rayleigh
  • Third-Party Dependencies
  • Compilation
  • Verifying Your Installation
  • Alternative: Installation using Spack
• Setting up a Rayleigh Development Environment
  • Conda Environment
  • Docker Container
  • Spack Environment
• Running the Code
  • Preparation
  • Code Execution and Load-Balancing
  • Controlling Run Length & Time Stepping
• Running a Benchmark
• Physics Controls
  • Anelastic Mode (dimensional)
  • Boussinesq Mode (nondimensional)
  • Anelastic Mode (nondimensional)
  • Boundary Conditions & Internal Heating
  • General Physics Controls
  • Initializing a Model
• Checkpointing
  • Standard Checkpoints
  • Quicksaves
  • Checkpoint Logs
• Cookbooks
  • Simple Boussinesq non-MHD benchmark: c2001_case0_minimal
  • Simple Boussinesq MHD benchmark: c2001_case1_minimal
  • Steady anelastic non-MHD benchmark: j2011_steady_hydro_minimal
  • Steady anelastic MHD benchmark: j2011_steady_mhd_minimal
• Custom Reference States
  • Creating a Coefficients File
  • Behavior of Transport Coefficients
  • Example Notebooks
• Diagnostic Outputs
  • The Lookup Table (LUT)
• I/O Control
  • I/O Format Controls
  • I/O Redirection
• Ensemble Mode
• References
• Plotting Examples
  • Contents
  • I. Running a Benchmark with Sample Output
  • II. Configuring Your Python Environment
  • III. Overview of Diagnostics in Rayleigh
  • V. Shell Averages
  • VI. Azimuthal Averages
  • VII. Simulation Slices
  • VIII. Spherical Harmonic Spectra
  • IX. Point Probes
  • X. Modal Outputs